About
Our project focusses on the stomata, tiny pores on the surface of plant leaves. Stomata play a central role in global water and carbon cycles while covering less than 5% of the leaf surface. Stomata open and close to provide CO2 for photosynthesis and to limit water loss, but this process varies in speed and dynamism between different species and phenotypes, as well as under fluctuating environmental conditions, like under changing light or humidity. The speed at which stomata respond influences the productivity and water use of both crops and natural ecosystems.
In this project, we will use novel temporal 3D imaging to provide a better description of stomatal movements in order to get a mechanistic understanding of how transient stomatal movement. To fully harness the high volume of 3D imaging data, we will develop novel computational methods to automatically segment images and track single 3D cells over time. This project will answer long-standing questions about stomatal movements and will generate basic knowledge on how to improve stomatal responses under dynamic environments in order to increase net productivity and water-use efficiency.
Core group members
Dr. Guillaume Théroux-Rancourt. PI. University of Natural Resources and Life Sciences, Vienna (BOKU).
Dr. Théroux-Rancourt’s research bridges plant ecophysiology, anatomy, and computational biology. He is an expert in imaging and analysing 3D plant leaf anatomy.
Prof. Dr. Ingeborg Lang. co-PI. University of Vienna.
Plant cell biology.
Univ. Prof. Dr. Walter Kropatsch. co-PI. Vienna University of Technology (TU Wien).
Pattern recognition and image analysis.
Dr. Danny Tholen. core member. University of Natural Resources and Life Sciences, Vienna (BOKU).
Plant ecophysiology and anatomy. University of Natural Resources and Life Sciences, Vienna (BOKU).
Dr. Jiří Hladůvka. core member. Vienna University of Technology (TU Wien).
Pattern recognition and image analysis.
Collaborators
Dr. Anne Bonnin. Swiss Light Source (Switzerland).
Radiation physicist, TOMCAT Tomography beamline.
Prof. Anja Geitmann. McGill University (Canada).
Plant cell biologist and expert on plant biomechanics.
Staff
Lukas Koller, M.Sc.
Research assistant.
Students
Maryam Zekri. Ph.D. student, University of Vienna.
Plant cell biology, ecophysiology, anatomy, and imaging. University of Vienna.
Rachel Grexova. Bachelor student, TU Wien.
Deep-learning segmentation of microCT images.
Oliver Troger. Bachelor student, TU Wien.
Deep-learning segmentation of microCT images.
Janika Tulacs. Bachelor student, TU Wien.
Deep-learning segmentation of microCT images.