Journal Publications

D. Tholen. GasanalyzeR: Advancing Reproducible Research using a New R Package for Photosynthesis Data Workflows, AoB Plants, vol. 16, no. 4, p. plae035, Jun. 2024, DOI:10.1093/aobpla/plae035.

M. A. Zekri, C. Leimhofer, N. Drexler, and I. Lang. A rapid freezing method to determine tissue layer thickness in drought-stressed leaves, Journal of Microscopy, pp. 1–9, 2024, DOI:10.1111/jmi.13272.

J. Hladůvka and W. G. Kropatsch. Enhanced iterative egg-shape fitting to discretized object boundaries, Journal of Mathematical Imaging and Vision, to appear.

G. Théroux-Rancourt, J. C. Herrera, K. Voggeneder, F. D. Berardinis, N. Luijken, L. Nocker, T. Savi, S. Scheffknecht, M. Schneck, and D. Tholen. Analyzing anatomy over three dimensions unpacks the differences in mesophyll diffusive area between sun and shade vitis vinifera leaves, AoB Plants, Jan. 2023, DOI:10.1093/aobpla/plad001.

M. Banaeyan and W. G. Kropatsch. Fast labeled spanning tree in binary irregular graph pyramids, Journal of Engineering Research and Sciences, vol. 1, no. 10, pp. 69–78, 2022, DOI:10.55708/js0110009.

S. Trueba, G. Théroux-Rancourt, J. M. Earles, T. N. Buckley, D. Love, D. M. Johnson, and C. Brodersen. The three-dimensional construction of leaves is coordinated with water use efficiency in conifers, New Phytologist, vol. 233, no. 2, pp. 851–861, 2022, DOI:10.1111/nph.17772.

A. M. Borsuk, A. B. Roddy, G. Théroux-Rancourt, and C. R. Brodersen. Structural organization of the spongy mesophyll, The New Phytologist, vol. 234, no. 3, p. 946, 2022, DOI:10.1111/nph.17971.

R. Harwood, G. Théroux-Rancourt, and M. M. Barbour. Understanding airspace in leaves: 3D anatomy and directional tortuosity, Plant, Cell & Environment, vol. 44, no. 8, pp. 2455–2465, 2021, DOI:10.1111/pce.14079.

Conference proceedings

J. Hladůvka and W. G. Kropatsch. Fitting egg-shapes to discretized object boundaries, in Discrete geometry and mathematical morphology, 2024, pp. 107–119, DOI:10.1007/978-3-031-57793-2_9.

M. Banaeyan and W. G. Kropatsch. Distance transform in images and connected plane graphs, in International conference on pattern recognition applications and methods, 2023, vol. 14547, pp. 19–32, DOI:10.1007/978-3-031-54726-3_2.

M. Banaeyan and W. G. Kropatsch. Reducing the computational complexity of the eccentricity transform of a tree, in Proceedings of the 13th AIPR-TC15 international workshop on graph based representation, 2023, vol. 14121, pp. 160–171, DOI:10.1007/978-3-031-42795-4_15.

M. Banaeyan and W. G. Kropatsch. Distance transform in parallel logarithmic complexity, in Proceedings of the 12th international conference on pattern recognition applications and methods - ICPRAM, 2023, pp. 115–123, DOI:10.5220/0011681500003411.

A. Palmrich, K. Voggeneder, D. Tholen, G. Theroux-Rancourt, J. Hladůvka, and W. Kropatsch. An unsupervised, shape-based 3D cell instance segmentation method for plant tissues, in OAGM workshop: Digitalization for smart farming and forestry, 2022, pp. 54–59, DOI:10.3217/978-3-85125-954-4-08.

R. Grexová, K. Voggeneder, D. Tholen, G. Theroux-Rancourt, W. Kropatsch, and J. Hladůvka. Towards uncertainty detection in automated leaf tissue segmentation, in OAGM workshop: Digitalization for smart farming and forestry, 2022, pp. 47–53, DOI:10.3217/978-3-85125-954-4-07.

M. Banaeyan, W. G. Kropatsch, and J. Hladůvka. Redundant 1-cells in multi-labeled 2-Gmap irregular pyramids, in OAGM workshop: Digitalization for smart farming and forestry, 2022, pp. 5–11, DOI:10.3217/978-3-85125-954-4-01.

Y. Sauzeau, W. Kropatsch, and J. Hladůvka. Modeling the diffusion of CO₂ inside leaves, in OAGM workshop: Digitalization for smart farming and forestry, 2022, pp. 70–72, DOI:10.3217/978-3-85125-954-4-11.

M. Banaeyan, D. Batavia, and W. G. Kropatsch. Removing redundancies in binary images, in International conference on intelligent systems and patterns recognition, 2022, pp. 221–233, DOI:10.1007/978-3-031-08277-1_19.

M. Banaeyan and W. G. Kropatsch. Parallel $O(\log(n))$ computation of the adjacency of connected components, in International conference on pattern recognition and artificial intelligence, 2022, pp. 102–113, DOI:10.1007/978-3-031-09282-4_9.

F. Bogner, J. Hladůvka, and W. G. Kropatsch. Implicit encoding and simplification/reduction of nGmaps, in Discrete geometry and mathematical morphology, 2022, pp. 110–122, DOI:10.1007/978-3-031-19897-7_10.

M. Banaeyan, C. Carratù, W. G. Kropatsch, and J. Hladůvka. Fast distance transforms in graphs and in Gmaps, in IAPR joint international workshops on statistical techniques in pattern recognition (SPR 2022) and structural and syntactic pattern recognition (SSPR 2022), 2022, pp. 193–202, DOI:10.1007/978-3-031-23028-8_20.

D. Tholen, S. Scheffknecht, K. Voggeneder, E. Weiss, and G. Théroux-Rancourt. Leaf Structure and Function in Four Dimensions: Non-invasive MicroCT Imaging During Gas-exchange Measurements, in EGU General Assembly Conference Abstracts, 2022, pp. EGU22–9801.

G. Théroux-Rancourt, A. B. Roddy, J. M. Earles, M. E. Gilbert, M. A. Zwieniecki, C. K. Boyce, D. Tholen, A. J. McElrone, K. A. Simonin, and C. R. Brodersen. Maximum CO₂ diffusion inside leaves is limited by the scaling of cell size and genome size, Proceedings. Biological Sciences, vol. 288, no. 1945, p. 20203145, Feb. 2021, DOI:10.1098/rspb.2020.3145.

F. Bogner, A. Palmrich, and W. G. Kropatsch. Border propagation: A novel approach to determine slope region decompositions, in Proceedings of the joint austrian computer vision and robotics workshop, 2020, pp. 137–142, DOI:10.3217/978-3-85125-752-6-31.

Theses, technical reports, datasets, packages

M. Banaeyan. Redundant edges and parallel algorithms in binary irregular graph pyramids, PhD thesis, Vienna University of Technology, 2024.

J. Tulacs. Supporting image annotation by building morphological pyramids, Bachelor's Thesis, Vienna University of Technology, 2023.

O. Troger. Semantic segmentation of 3D volumetric data using point-based neural networks, Bachelor's Thesis, Vienna University of Technology, 2022.

R. Grexová. U-Net segmentation of the poplar leaf using orthogonal axes ensemble, Bachelor's Thesis, Vienna University of Technology, 2022.

L. M. Koller. Phenotyping for drought stress tolerance with a focus on leaf anatomy and physiology, Master’s thesis, University Vienna, 2022.

F. Wolf. Learning-based leaf cell instance segmentation, PRIP, TU Wien, PRIP-TR-155, 2022.

J. Hladůvka, F. Bogner, and W. G. Kropatsch. Implicit unbounded n-Gmaps for images: A membrane-centric encoding using bit-flips, PRIP, TU Wien, PRIP-TR-154, 2022.

L. Boccia. Efficient contraction kernel selection with a knight’s move, PRIP, TU Wien, PRIP-TR-152, 2022.

C. Carratù. Distance transforms on Gmaps, PRIP, TU Wien, PRIP-TR-153, 2022.

V. Pelletier and J. Hladůvka. Eggshapes: A collection of egg-shaped objects and their boundaries. dataset; TU Wien, Dec-2023.

D. Tholen Gasanalyzer: Import, recompute and analyze data from portable gas analyzers. 2024.

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